Mercurial > repos > iuc > package_diamond_0_6_13
comparison tool_dependencies.xml @ 0:47c4dfd5aed5 draft
Imported from capsule None
| author | iuc |
|---|---|
| date | Sun, 08 Feb 2015 09:55:52 -0500 |
| parents | |
| children | af3605b68204 |
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| -1:000000000000 | 0:47c4dfd5aed5 |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="diamond" version="0.6.13"> | |
| 4 <install version="1.0"> | |
| 5 <actions_group> | |
| 6 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> | |
| 7 <actions os="linux" architecture="x86_64"> | |
| 8 <action type="download_by_url">http://www-ab.informatik.uni-tuebingen.de/data/software/diamond/download/public/diamond-linux64.tar.gz</action> | |
| 9 <action type="move_file"> | |
| 10 <source>diamond</source> | |
| 11 <destination>$INSTALL_DIR</destination> | |
| 12 </action> | |
| 13 </actions> | |
| 14 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> | |
| 15 <actions> | |
| 16 <action type="shell_command">echo "ERROR: Automated installation is currently not supported."</action> | |
| 17 <action type="shell_command">echo "Please report this via https://github.com/bgruening/galaxytools/issues - thank you!"</action> | |
| 18 <action type="shell_command">false</action> | |
| 19 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> | |
| 20 </actions> | |
| 21 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> | |
| 22 <action type="set_environment"> | |
| 23 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 24 <environment_variable name="DIAMOND_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> | |
| 25 </action> | |
| 26 </actions_group> | |
| 27 </install> | |
| 28 <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme> | |
| 29 </package> | |
| 30 </tool_dependency> | |
| 31 | |
| 32 | |
| 33 |