Mercurial > repos > iuc > package_diamond_0_6_13

changeset 0:47c4dfd5aed5 draft

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Imported from capsule None
author iuc
date Sun, 08 Feb 2015 09:55:52 -0500
parents
children af3605b68204
files tool_dependencies.xml
diffstat 1 files changed, 33 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sun Feb 08 09:55:52 2015 -0500
@@ -0,0 +1,33 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="diamond" version="0.6.13">
+        <install version="1.0">
+            <actions_group>
+                <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
+                <actions os="linux" architecture="x86_64">
+                    <action type="download_by_url">http://www-ab.informatik.uni-tuebingen.de/data/software/diamond/download/public/diamond-linux64.tar.gz</action>
+                    <action type="move_file">
+                        <source>diamond</source>
+                        <destination>$INSTALL_DIR</destination>
+                    </action>
+                </actions>
+                <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
+                <actions>
+                    <action type="shell_command">echo "ERROR: Automated installation is currently not supported."</action>
+                    <action type="shell_command">echo "Please report this via https://github.com/bgruening/galaxytools/issues - thank you!"</action>
+                    <action type="shell_command">false</action>
+                    <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
+                </actions>
+                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="DIAMOND_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme>
+    </package>
+</tool_dependency>
+
+
+