Mercurial > repos > iuc > package_diamond_0_7_10

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
author iuc
date Wed, 09 Dec 2015 14:23:51 -0500
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c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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1 <?xml version="1.0"?>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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2 <tool_dependency>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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3 <package name="diamond" version="0.7.10">
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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4 <install version="1.0">
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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5 <actions_group>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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6 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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7 <actions os="linux" architecture="x86_64">
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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8 <action sha256sum="db6cf64839b989306cfba752c05c192acc1bce133e0821a63e70a882d22b96aa" type="download_by_url">https://github.com/bbuchfink/diamond/releases/download/v0.7.10/diamond-linux64.tar.gz</action>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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9 <action type="move_file">
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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10 <source>diamond</source>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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11 <destination>$INSTALL_DIR</destination>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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12 </action>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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13 </actions>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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14 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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15 <actions>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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16 <action target_filename="diamond-0.7.10.tar.gz" sha256sum="a7164ce53490d6bd37ea4232778aab714d82c8b071e0969931af2fc9aa1c1ca1" type="download_by_url">https://github.com/bbuchfink/diamond/archive/v0.7.10.tar.gz</action>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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17 <action type="shell_command"><![CDATA[ cd src && ./install-boost ]]></action>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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18 <action type="shell_command"><![CDATA[ cd src && make ]]></action>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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19 <action type="move_file">
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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20 <source>bin/diamond</source>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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21 <destination>$INSTALL_DIR</destination>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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22 </action>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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23 </actions>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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24 <action type="set_environment">
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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25 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
iuc
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26 </action>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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27 </actions_group>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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28 </install>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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29 <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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30 </package>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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31 </tool_dependency>
c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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c538574b1553 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
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