Mercurial > repos > iuc > package_diamond_0_7_10

changeset 0:c538574b1553 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_diamond_0_7_10 commit dce6fcea9c88ccc62f3a0c5d49dddda8a93527e7
author iuc
date Wed, 09 Dec 2015 14:23:51 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 34 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Dec 09 14:23:51 2015 -0500
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="diamond" version="0.7.10">
+        <install version="1.0">
+            <actions_group>
+                <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
+                <actions os="linux" architecture="x86_64">
+                    <action sha256sum="db6cf64839b989306cfba752c05c192acc1bce133e0821a63e70a882d22b96aa" type="download_by_url">https://github.com/bbuchfink/diamond/releases/download/v0.7.10/diamond-linux64.tar.gz</action>
+                    <action type="move_file">
+                        <source>diamond</source>
+                        <destination>$INSTALL_DIR</destination>
+                    </action>
+                </actions>
+                <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
+                <actions>
+                    <action target_filename="diamond-0.7.10.tar.gz" sha256sum="a7164ce53490d6bd37ea4232778aab714d82c8b071e0969931af2fc9aa1c1ca1" type="download_by_url">https://github.com/bbuchfink/diamond/archive/v0.7.10.tar.gz</action>
+                    <action type="shell_command"><![CDATA[ cd src && ./install-boost ]]></action>
+                    <action type="shell_command"><![CDATA[ cd src && make ]]></action>
+                    <action type="move_file">
+                        <source>bin/diamond</source>
+                        <destination>$INSTALL_DIR</destination>
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme>
+    </package>
+</tool_dependency>
+
+
+