Mercurial > repos > iuc > package_fastqc_0_11_4

annotate tool_dependencies.xml @ 1:a288b8869b7b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit 63e5f020f3f458b4ec43dd44764448efa3178f59
author iuc
date Tue, 19 Jan 2016 06:56:53 -0500
parents a7f81f2554ad
children a8f485b2efd9
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
2 <tool_dependency>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
3 <package name="FastQC" version="0.11.4">
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
4 <install version="1.0">
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
5 <actions_group>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
6 <actions os="linux" architecture="x86_64">
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
7 <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
8 <action type="move_directory_files">
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
9 <source_directory>../FastQC</source_directory>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
10 <destination_directory>$INSTALL_DIR</destination_directory>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
12 </action>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
13 </actions>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
14 <actions os="darwin" architecture="x86_64">
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
15 <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
16 <action type="shell_command">
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
17 hdiutil attach fastqc_v0.11.4.dmg &amp;&amp;
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
18 cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR &amp;&amp;
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
19 hdiutil detach /Volumes/FastQC
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
20 </action>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
21 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
22 </actions>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
23 <action type="set_environment">
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
1
a288b8869b7b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit 63e5f020f3f458b4ec43dd44764448efa3178f59
iuc
parents: 0
diff changeset
25 <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
0
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
26 </action>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
27 </actions_group>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
28 </install>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
29 </package>
a7f81f2554ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
parents:
diff changeset
30 </tool_dependency>