Mercurial > repos > iuc > package_fastqc_0_11_4
annotate tool_dependencies.xml @ 2:a8f485b2efd9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
author | iuc |
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date | Tue, 19 Jan 2016 09:37:46 -0500 |
parents | a288b8869b7b |
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a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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1 <?xml version="1.0"?> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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2 <tool_dependency> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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3 <package name="FastQC" version="0.11.4"> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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4 <install version="1.0"> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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5 <actions_group> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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6 <actions os="linux" architecture="x86_64"> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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7 <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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8 <action type="move_directory_files"> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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9 <source_directory>../FastQC</source_directory> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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10 <destination_directory>$INSTALL_DIR</destination_directory> |
2
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
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11 </action> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
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12 <action type="chmod"> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
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13 <file mode="755">$INSTALL_DIR/fastqc</file> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
parents:
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14 </action> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
parents:
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15 <action type="set_environment"> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
parents:
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17 <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> |
0
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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18 </action> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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19 </actions> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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20 <actions os="darwin" architecture="x86_64"> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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21 <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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22 <action type="shell_command"> |
2
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
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23 hdiutil attach fastqc_0.11.4_darwin_all.dmg && |
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a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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24 cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR && |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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25 hdiutil detach /Volumes/FastQC |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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26 </action> |
2
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
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27 <action type="set_environment"> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
parents:
1
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28 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC.app/Contents/MacOS</environment_variable> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
parents:
1
diff
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29 <environment_variable name="FASTQC_JAR_PATH" action="set_to">$INSTALL_DIR/FastQC.app/Contents/MacOS</environment_variable> |
a8f485b2efd9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit b'67cff25a50ba173b0468819204d0999496f68ea9'
iuc
parents:
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30 </action> |
0
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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31 </actions> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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32 </actions_group> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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33 </install> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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34 </package> |
a7f81f2554ad
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_fastqc_0_11_4 commit f5fbc019067477af4a8c340c7d25af4a32563f21
iuc
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35 </tool_dependency> |