Mercurial > repos > iuc > package_gemini_0_18_1

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
author iuc
date Thu, 18 Feb 2016 10:31:28 -0500
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be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
iuc
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1 <?xml version="1.0"?>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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2 <tool_dependency>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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3 <package name="zlib" version="1.2.8">
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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4 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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5 </package>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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6 <package name="gemini" version="0.18.1">
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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7 <install version="1.0">
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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8 <actions>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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9 <!-- first action is always downloading -->
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49de32b47548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
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10 <action sha256sum="1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68" type="download_by_url">https://github.com/arq5x/gemini/archive/v0.18.1.tar.gz</action>
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be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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12 <!-- populate the environment variables from the dependend repos -->
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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13 <action type="set_environment_for_install">
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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14 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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15 <package name="zlib" version="1.2.8" />
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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16 </repository>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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17 </action>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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19 <action type="shell_command">
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49de32b47548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
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20 sed -i.bak -e 's/^gemini=0.18.1=py27_7/gemini=0.18.1=py27_2/g' ./versioning/0.18.1/requirements_conda.txt
49de32b47548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
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21 </action>
49de32b47548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
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49de32b47548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
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23 <action type="shell_command">
49de32b47548 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 08d911cd6eeeb0520348313cb29c9eff83c4c573
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24 export HOME=$INSTALL_DIR &amp;&amp; python ./gemini/scripts/gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.1
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be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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25 </action>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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27 <action type="set_environment">
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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29 <environment_variable action="set_to" name="HOME">.</environment_variable>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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30 </action>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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31 </actions>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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32 </install>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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33 <readme>Compiling GEMINI requires a recent c++ compiler, usually gcc.</readme>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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34 </package>
be869e11582f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
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35 </tool_dependency>