Mercurial > repos > iuc > package_gemini_0_18_1

changeset 0:be869e11582f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gemini_0_18_1 commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
author iuc
date Thu, 18 Feb 2016 08:48:43 -0500
parents
children 49de32b47548
files tool_dependencies.xml
diffstat 1 files changed, 31 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Feb 18 08:48:43 2016 -0500
@@ -0,0 +1,31 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="zlib" version="1.2.8">
+        <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="gemini" version="0.18.1">
+        <install version="1.0">
+            <actions>
+                <!-- first action is always downloading -->
+                <action sha256sum="1d3d3b9d47555e1f62c1a870d8fd2ecbfc0bed25910cab31af5b585db3144a68" type="download_file">https://github.com/arq5x/gemini/archive/v0.18.1.tar.gz</action>
+
+                <!-- populate the environment variables from the dependend repos -->
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="zlib" version="1.2.8" />
+                    </repository>
+                </action>
+
+                <action type="shell_command">
+                    export HOME=$INSTALL_DIR &amp;&amp; python gemini_install.py $INSTALL_DIR $INSTALL_DIR --nodata --gemini-version 0.18.1
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/anaconda/bin</environment_variable>
+                    <environment_variable action="set_to" name="HOME">.</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Compiling GEMINI requires a recent c++ compiler, usually gcc.</readme>
+    </package>
+</tool_dependency>