Mercurial > repos > iuc > package_homer_4_2
comparison tool_dependencies.xml @ 0:9a932c2b584e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_homer_4_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author | iuc |
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date | Fri, 17 Jul 2015 10:31:02 -0400 |
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-1:000000000000 | 0:9a932c2b584e |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="ghostscript" version="9.07"> | |
4 <repository changeset_revision="641d51248b4b" name="package_ghostscript_9_07" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="perl" version="5.18.1"> | |
7 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
8 </package> | |
9 <package name="weblogo" version="2.8.2"> | |
10 <repository changeset_revision="c1154c64359c" name="package_weblogo_2_8_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
11 </package> | |
12 <package name="blat" version="35x1"> | |
13 <repository changeset_revision="cc0f4b49b6f1" name="package_blat_35x1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
14 </package> | |
15 <package name="homer" version="4.2"> | |
16 <install version="1.0"> | |
17 <actions> | |
18 <action type="download_by_url">http://biowhat.ucsd.edu/homer/homer.v4.2.zip</action> | |
19 <action type="set_environment_for_install"> | |
20 <repository changeset_revision="641d51248b4b" name="package_ghostscript_9_07" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
21 <package name="ghostscript" version="9.07" /> | |
22 </repository> | |
23 <repository changeset_revision="c1154c64359c" name="package_weblogo_2_8_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
24 <package name="weblogo" version="2.8.2" /> | |
25 </repository> | |
26 <repository changeset_revision="cc0f4b49b6f1" name="package_blat_35x1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
27 <package name="blat" version="35x1" /> | |
28 </repository> | |
29 </action> | |
30 | |
31 <action type="move_directory_files"> | |
32 <source_directory>.</source_directory> | |
33 <destination_directory>$INSTALL_DIR/homer</destination_directory> | |
34 </action> | |
35 | |
36 <action type="set_environment"> | |
37 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/homer/bin</environment_variable> | |
38 <environment_variable action="append_to" name="PATH">$ENV[WEBLOGO_PATH]</environment_variable> | |
39 <environment_variable action="append_to" name="PATH">$ENV[GHOSTSCRIPT_PATH]</environment_variable> | |
40 <environment_variable action="append_to" name="PATH">$ENV[BLAT_PATH]</environment_variable> | |
41 <environment_variable action="append_to" name="PATH">$ENV[PERL_ROOT_DIR]/bin</environment_variable> | |
42 <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable> | |
43 </action> | |
44 </actions> | |
45 </install> | |
46 <readme>Installing HOMER requires a perl environment. http://biowhat.ucsd.edu/homer/</readme> | |
47 </package> | |
48 </tool_dependency> |