Mercurial > repos > iuc > package_homer_4_2

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_homer_4_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:31:02 -0400
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-1:000000000000 0:9a932c2b584e
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="ghostscript" version="9.07">
4 <repository changeset_revision="641d51248b4b" name="package_ghostscript_9_07" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="perl" version="5.18.1">
7 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="weblogo" version="2.8.2">
10 <repository changeset_revision="c1154c64359c" name="package_weblogo_2_8_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="blat" version="35x1">
13 <repository changeset_revision="cc0f4b49b6f1" name="package_blat_35x1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="homer" version="4.2">
16 <install version="1.0">
17 <actions>
18 <action type="download_by_url">http://biowhat.ucsd.edu/homer/homer.v4.2.zip</action>
19 <action type="set_environment_for_install">
20 <repository changeset_revision="641d51248b4b" name="package_ghostscript_9_07" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
21 <package name="ghostscript" version="9.07" />
22 </repository>
23 <repository changeset_revision="c1154c64359c" name="package_weblogo_2_8_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
24 <package name="weblogo" version="2.8.2" />
25 </repository>
26 <repository changeset_revision="cc0f4b49b6f1" name="package_blat_35x1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
27 <package name="blat" version="35x1" />
28 </repository>
29 </action>
30
31 <action type="move_directory_files">
32 <source_directory>.</source_directory>
33 <destination_directory>$INSTALL_DIR/homer</destination_directory>
34 </action>
35
36 <action type="set_environment">
37 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/homer/bin</environment_variable>
38 <environment_variable action="append_to" name="PATH">$ENV[WEBLOGO_PATH]</environment_variable>
39 <environment_variable action="append_to" name="PATH">$ENV[GHOSTSCRIPT_PATH]</environment_variable>
40 <environment_variable action="append_to" name="PATH">$ENV[BLAT_PATH]</environment_variable>
41 <environment_variable action="append_to" name="PATH">$ENV[PERL_ROOT_DIR]/bin</environment_variable>
42 <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable>
43 </action>
44 </actions>
45 </install>
46 <readme>Installing HOMER requires a perl environment. http://biowhat.ucsd.edu/homer/</readme>
47 </package>
48 </tool_dependency>