Mercurial > repos > iuc > package_htseq_0_6

comparison tool_dependencies.xml @ 0:5b3da3e3543d draft

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Imported from capsule None
author iuc
date Wed, 23 Jul 2014 05:45:36 -0400
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children fbb72996807d
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-1:000000000000 0:5b3da3e3543d
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="matplotlib" version="1.2.1">
7 <repository changeset_revision="fe60617380df" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="htseq" version="0.6.1">
10 <install version="1.0">
11 <actions>
12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action>
13 <action type="set_environment_for_install">
14 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
15 <package name="numpy" version="1.7.1" />
16 </repository>
17 <repository changeset_revision="fe60617380df" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
18 <package name="matplotlib" version="1.2.1" />
19 </repository>
20 </action>
21 <action type="make_directory">$INSTALL_DIR/lib/python</action>
22 <action type="shell_command">
23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
24 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
25 <action type="set_environment">
26 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
28 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
29 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
30 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
31 <environment_variable action="set_to" name="HTSEQ_ROOT_PATH">$INSTALL_DIR</environment_variable>
32 </action>
33 </actions>
34 </install>
35 <readme>
36 Installation of htseq. The installation can be accessed via HTSEQ_ROOT_PATH.
37 https://pypi.python.org/pypi/HTSeq
38 </readme>
39 </package>
40 </tool_dependency>