Mercurial > repos > iuc > package_htseq_0_6

comparison tool_dependencies.xml @ 1:fbb72996807d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_htseq_0_6 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:32:12 -0400
parents 5b3da3e3543d
children
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0:5b3da3e3543d 1:fbb72996807d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.7.1"> 3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="matplotlib" version="1.2.1"> 6 <package name="matplotlib" version="1.2.1">
7 <repository changeset_revision="fe60617380df" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="a03ee94316b5" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="htseq" version="0.6.1"> 9 <package name="htseq" version="0.6.1">
10 <install version="1.0"> 10 <install version="1.0">
11 <actions> 11 <actions>
12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action> 12 <action type="download_by_url">https://pypi.python.org/packages/source/H/HTSeq/HTSeq-0.6.1.tar.gz</action>
13 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
14 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
15 <package name="numpy" version="1.7.1" /> 15 <package name="numpy" version="1.7.1" />
16 </repository> 16 </repository>
17 <repository changeset_revision="fe60617380df" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="a03ee94316b5" name="package_matplotlib_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="matplotlib" version="1.2.1" /> 18 <package name="matplotlib" version="1.2.1" />
19 </repository> 19 </repository>
20 </action> 20 </action>
21 <action type="make_directory">$INSTALL_DIR/lib/python</action> 21 <action type="make_directory">$INSTALL_DIR/lib/python</action>
22 <action type="shell_command"> 22 <action type="shell_command">
23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
24 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> 24 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
25 <action type="set_environment"> 25 <action type="set_environment">
26 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 26 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
28 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> 28 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
29 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> 29 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
30 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> 30 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
31 <environment_variable action="set_to" name="HTSEQ_ROOT_PATH">$INSTALL_DIR</environment_variable> 31 <environment_variable action="set_to" name="HTSEQ_ROOT_PATH">$INSTALL_DIR</environment_variable>