Mercurial > repos > iuc > package_krona_2_5
comparison tool_dependencies.xml @ 0:96d808a49774 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
author | iuc |
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date | Fri, 31 Jul 2015 15:37:43 -0400 |
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-1:000000000000 | 0:96d808a49774 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="perl" version="5.18.1"> | |
4 <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="krona" version="2.5"> | |
7 <install version="1.0"> | |
8 <actions> | |
9 <action type="download_by_url">https://depot.galaxyproject.org/package/source/KronaTools-2.5.tar</action> | |
10 <action type="set_environment_for_install"> | |
11 <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | |
12 <package name="perl" version="5.18.1" /> | |
13 </repository> | |
14 </action> | |
15 <action type="move_directory_files"> | |
16 <source_directory>lib</source_directory> | |
17 <destination_directory>$INSTALL_DIR/lib</destination_directory> | |
18 </action> | |
19 <action type="move_directory_files"> | |
20 <source_directory>scripts</source_directory> | |
21 <destination_directory>$INSTALL_DIR/scripts</destination_directory> | |
22 </action> | |
23 <action type="move_directory_files"> | |
24 <source_directory>img</source_directory> | |
25 <destination_directory>$INSTALL_DIR/img</destination_directory> | |
26 </action> | |
27 <action type="move_directory_files"> | |
28 <source_directory>src</source_directory> | |
29 <destination_directory>$INSTALL_DIR/src</destination_directory> | |
30 </action> | |
31 <action type="make_directory">$INSTALL_DIR/bin</action> | |
32 <action type="shell_command"> | |
33 for i in ClassifyBLAST GetContigMagnitudes GetLibPath GetTaxIDFromGI \ | |
34 ImportBLAST ImportDiskUsage ImportEC ImportFCP ImportGalaxy \ | |
35 ImportMETAREP-BLAST ImportMETAREP-EC ImportMGRAST ImportPhymmBL \ | |
36 ImportRDP ImportRDPComparison ImportTaxonomy ImportText ImportXML ; do | |
37 ln -s $INSTALL_DIR/scripts/$i.pl $INSTALL_DIR/bin/kt$i | |
38 done | |
39 </action> | |
40 <action type="set_environment"> | |
41 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
42 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> | |
43 </action> | |
44 </actions> | |
45 </install> | |
46 <readme /> | |
47 </package> | |
48 </tool_dependency> |