Mercurial > repos > iuc > package_krona_2_5

comparison tool_dependencies.xml @ 0:96d808a49774 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba
author iuc
date Fri, 31 Jul 2015 15:37:43 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="perl" version="5.18.1">
4 <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="krona" version="2.5">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">https://depot.galaxyproject.org/package/source/KronaTools-2.5.tar</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="perl" version="5.18.1" />
13 </repository>
14 </action>
15 <action type="move_directory_files">
16 <source_directory>lib</source_directory>
17 <destination_directory>$INSTALL_DIR/lib</destination_directory>
18 </action>
19 <action type="move_directory_files">
20 <source_directory>scripts</source_directory>
21 <destination_directory>$INSTALL_DIR/scripts</destination_directory>
22 </action>
23 <action type="move_directory_files">
24 <source_directory>img</source_directory>
25 <destination_directory>$INSTALL_DIR/img</destination_directory>
26 </action>
27 <action type="move_directory_files">
28 <source_directory>src</source_directory>
29 <destination_directory>$INSTALL_DIR/src</destination_directory>
30 </action>
31 <action type="make_directory">$INSTALL_DIR/bin</action>
32 <action type="shell_command">
33 for i in ClassifyBLAST GetContigMagnitudes GetLibPath GetTaxIDFromGI \
34 ImportBLAST ImportDiskUsage ImportEC ImportFCP ImportGalaxy \
35 ImportMETAREP-BLAST ImportMETAREP-EC ImportMGRAST ImportPhymmBL \
36 ImportRDP ImportRDPComparison ImportTaxonomy ImportText ImportXML ; do
37 ln -s $INSTALL_DIR/scripts/$i.pl $INSTALL_DIR/bin/kt$i
38 done
39 </action>
40 <action type="set_environment">
41 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
42 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
43 </action>
44 </actions>
45 </install>
46 <readme />
47 </package>
48 </tool_dependency>