# HG changeset patch
# User iuc
# Date 1438371463 14400
# Node ID 96d808a49774f06301aa146e2cf98272f1641b51

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_krona_2_5 commit 8b1065673b716bdf9f78beff92ce839740ef41ba

diff -r 000000000000 -r 96d808a49774 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jul 31 15:37:43 2015 -0400
@@ -0,0 +1,48 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="krona" version="2.5">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://depot.galaxyproject.org/package/source/KronaTools-2.5.tar</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="fd34b72b501b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>lib</source_directory>
+                    <destination_directory>$INSTALL_DIR/lib</destination_directory>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>scripts</source_directory>
+                    <destination_directory>$INSTALL_DIR/scripts</destination_directory>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>img</source_directory>
+                    <destination_directory>$INSTALL_DIR/img</destination_directory>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>src</source_directory>
+                    <destination_directory>$INSTALL_DIR/src</destination_directory>
+                </action>
+                <action type="make_directory">$INSTALL_DIR/bin</action>
+                <action type="shell_command">
+                    for i in ClassifyBLAST GetContigMagnitudes GetLibPath GetTaxIDFromGI \
+                            ImportBLAST ImportDiskUsage ImportEC ImportFCP ImportGalaxy \
+                            ImportMETAREP-BLAST ImportMETAREP-EC ImportMGRAST ImportPhymmBL \
+                            ImportRDP ImportRDPComparison ImportTaxonomy ImportText ImportXML ; do
+                        ln -s $INSTALL_DIR/scripts/$i.pl $INSTALL_DIR/bin/kt$i
+                    done
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable> 
+                </action>
+            </actions>
+        </install>
+        <readme />
+    </package>
+</tool_dependency>