Mercurial > repos > iuc > package_lastz_1_03_52

changeset 0:d2a8ad56c234 draft default tip

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Uploaded tool_dependencies.xml
author iuc
date Wed, 22 Jan 2014 14:40:23 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 41 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jan 22 14:40:23 2014 -0500
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="lastz" version="1.03.52">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/linux/x86_64/lastz/lastz-1.03.52-linux-x86_64.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_by_url">http://depot.galaxyproject.org/package/darwin/x86_64/lastz/lastz-1.03.52-Darwin-x86_64.tgz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <actions>
+                    <action type="download_by_url" target_filename="lastz-1.03.52.tar.gz">http://www.bx.psu.edu/~rsharris/lastz/newer/lastz-1.03.52.tar.gz</action>
+                    <action type="shell_command">make</action>
+                    <action type="move_file">
+                        <source>src/lastz</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>src/lastz_D</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.
+        </readme>
+    </package>
+</tool_dependency>