Mercurial > repos > iuc > package_legacy_blast_2_2_22

changeset 0:67fbfb9fcec2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_legacy_blast_2_2_22 commit e23a8ad798830209db722d5496d19ec7a5e06214
author iuc
date Mon, 01 Aug 2016 14:33:09 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 63 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Aug 01 14:33:09 2016 -0400
@@ -0,0 +1,63 @@
+<?xml version='1.0' encoding='utf-8'?>
+<tool_dependency>
+    <package name="legacy_blast" version="2.2.22">
+        <install version="1.0">
+            <actions_group>
+                <!-- Download the binaries for BLAST compatible with 64-bit OSX. -->
+                <actions os="darwin" architecture="x86_64">
+                    <action type="download_by_url" target_filename="blast-2.2.22.tgz" sha256sum="ea2df351cb8069428a8f2882b0225ef056a4056a5409c57926918dfb9797d7d7">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-universal-macosx.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <!-- Download the binaries for BLAST compatible with 32-bit OSX. -->
+                <actions os="darwin" architecture="i386">
+                    <action type="download_by_url" target_filename="blast-2.2.22.tgz" sha256sum="ea2df351cb8069428a8f2882b0225ef056a4056a5409c57926918dfb9797d7d7">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-universal-macosx.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <!-- Download the binaries for BLAST compatible with 64-bit Linux. -->
+                <actions os="linux" architecture="x86_64">
+                    <action type="download_by_url" target_filename="blast-2.2.22.tgz" sha256sum="4fa41716bb5616d811824569f7514c6ed86a3d82a3a73fc089f264f8d0d99d02">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-x64-linux.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <!-- Download the binaries for BLAST compatible with 32-bit Linux (i386). -->
+                <actions os="linux" architecture="i386">
+                    <action type="download_by_url" target_filename="blast-2.2.22.tgz" sha256sum="41109b966f6f8dd39b7445374e1464dc84b8ad1e4506b25c1a50e43eb5a7df2d">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-ia32-linux.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <!-- Download the binaries for BLAST compatible with 32-bit Linux (i686). -->
+                <actions os="linux" architecture="i686">
+                    <action type="download_by_url" target_filename="blast-2.2.22.tgz" sha256sum="41109b966f6f8dd39b7445374e1464dc84b8ad1e4506b25c1a50e43eb5a7df2d">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/legacy/2.2.22/blast-2.2.22-ia32-linux.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+*Repository Description*
+The package_blast_legacy_2_2_22 repository downloads and builds the legacy NCBI Blast source code v2.2.22 on various operating systems and architectures.
+The repository is a modification of the NCBI Blast Plus package.
+
+These links provide information for building the legacy NCBI Blast package in most environments.
+
+System requirements
+http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
+        </readme>
+    </package>
+</tool_dependency>