comparison tool_dependencies.xml @ 1:d63425547b4c draft

Uploaded
author iuc
date Wed, 15 Jun 2016 08:07:50 -0400
parents 15c6da429d88
children 18e2e2ef0f08
comparison
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0:15c6da429d88 1:d63425547b4c
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="libxml2" version="2.9.3"> 3 <package name="libxslt" version="1.1.28">
4 <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="libxslt" version="1.1.28"> 6 <package name="perl_xml_parser_expat" version="2.41">
7 <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="meme" version="4.11.0">
7 <install version="1.0"> 10 <install version="1.0">
8 <actions> 11 <actions>
9 <action type="download_by_url">ftp://xmlsoft.org/libxml2/libxslt-1.1.28.tar.gz</action> 12 <action sha256sum="5dc4841f4816ef25bdb4bd088c76606c1b42726e7d65cc417f0f8c49fe7e237f" type="download_by_url">https://depot.galaxyproject.org/software/meme/meme_4.11.0_src_all.tar.gz</action>
10 <action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
11 <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> 14 <repository changeset_revision="15c6da429d88" name="package_libxslt_1_1_28" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="libxml2" version="2.9.3" /> 15 <package name="libxslt" version="1.1.28" />
13 </repository> 16 </repository>
17 <repository changeset_revision="1ce3818a8eb9" name="package_perl_xml_parser_expat_2_41" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="perl_xml_parser_expat" version="2.41" />
19 </repository>
20 </action>
21 <action type="shell_command">
22 # Handle this bug: https://groups.google.com/forum/#!topic/meme-suite/rHmLmSt2IiQ
23 sed -i.bak -e 's|sprintf(evt_string, "%8g", dataset-&gt;evt)|sprintf(evt_string, "%g", dataset-&gt;evt)|' src/display.c
14 </action> 24 </action>
15 <action type="autoconf" /> 25 <action type="autoconf" />
16 <action type="set_environment"> 26 <action type="set_environment">
17 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 27 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
19 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> 28 <environment_variable action="prepend_to" name="PERL5LIB">$ENV[PERL5LIB]</environment_variable>
20 <environment_variable action="prepend_to" name="DYLD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
21 <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
22 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
23 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
24 </action> 29 </action>
25 </actions> 30 </actions>
26 </install> 31 </install>
27 <readme /> 32 <readme>
33 </readme>
28 </package> 34 </package>
29 </tool_dependency> 35 </tool_dependency>