Mercurial > repos > iuc > package_msgfplus_20140210

annotate tool_dependencies.xml @ 0:4e9e5c400a97 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 14:59:32 -0400
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4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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1 <?xml version="1.0"?>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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2 <tool_dependency>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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3 <package name="msgfplus" version="20140210">
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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4 <install version="1.0">
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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5 <actions>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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6 <action type="download_by_url">http://proteomics.ucsd.edu/Software/MSGFPlus/MSGFPlus.20140210.zip</action>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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7 <action type="move_file">
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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8 <source>MSGFPlus.jar</source>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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9 <destination>$INSTALL_DIR</destination>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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10 </action>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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11 <action type="set_environment">
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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12 <environment_variable name="MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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13 <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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15 </action>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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16 </actions>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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17 </install>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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18 <readme>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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19 Downloads and installs MSGF+.
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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20 https://proteomics.ucsd.edu/
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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21 Java 1.6 is required to run MSGF+.
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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22 </readme>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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23 </package>
4e9e5c400a97 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_msgfplus_20140210 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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24 </tool_dependency>