Mercurial > repos > iuc > package_ncbi_vdb_2_5_2

comparison tool_dependencies.xml @ 1:17ae6c0040ea draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
author iuc
date Tue, 01 Mar 2016 07:08:58 -0500
parents b980182ad267
children
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0:b980182ad267 1:17ae6c0040ea
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="perl" version="5.18.1">
4 <repository changeset_revision="03f5951a9855" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="libxml2" version="2.9.3">
7 <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
3 <package name="ngs_sdk" version="1.1.3"> 9 <package name="ngs_sdk" version="1.1.3">
4 <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 11 </package>
6 <package name="ncbi_vdb" version="2.5.2"> 12 <package name="ncbi_vdb" version="2.5.2">
7 <install version="1.0"> 13 <install version="1.0">
8 <actions> 14 <actions>
9 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action> 15 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
10 <action type="set_environment_for_install"> 16 <action type="set_environment_for_install">
11 <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="03f5951a9855" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="perl" version="5.18.1" /> 18 <package name="perl" version="5.18.1" />
19 </repository>
20 <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
21 <package name="libxml2" version="2.9.3" />
13 </repository> 22 </repository>
14 <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 23 <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
15 <package name="ngs_sdk" version="1.1.3" /> 24 <package name="ngs_sdk" version="1.1.3" />
16 </repository> 25 </repository>
17 </action> 26 </action>
18 <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --build=$INSTALL_DIR</action> 27 <action type="autoconf">--prefix=$INSTALL_DIR --with-ngs-sdk-prefix=$NGS_SDK_DIR --with-xml2-prefix=$LIBXML2_ROOT_DIR --build=$INSTALL_DIR</action>
19 <action type="move_directory_files"> 28 <action type="move_directory_files">
20 <source_directory>.</source_directory> 29 <source_directory>.</source_directory>
21 <destination_directory>$INSTALL_DIR/</destination_directory> 30 <destination_directory>$INSTALL_DIR/</destination_directory>
22 </action> 31 </action>
23 <action type="set_environment"> 32 <action type="set_environment">