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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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7
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3 <package name="atlas" version="3.10.2">
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12
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4 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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7
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5 </package>
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6 <package name="numpy" version="1.7.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.7.1.tar.gz</action>
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10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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7
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11 <action type="set_environment_for_install">
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12
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12 <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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7
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13 <package name="atlas" version="3.10.2" />
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14 </repository>
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15 </action>
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12
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16 <action type="shell_command">
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17 cat > site.cfg <<EOF
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18 [DEFAULT]
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19 library_dirs = $ATLAS_LIB_DIR
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20 include_dirs = $ATLAS_INCLUDE_DIR
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21 [blas_opt]
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22 libraries = blas, atlas
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23 [lapack_opt]
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24 libraries = lapack, atlas
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25 EOF
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26 </action>
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3
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27 <action type="shell_command">
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28 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&
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7
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29 export ATLAS=$ATLAS_ROOT_PATH &&
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3
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30 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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2
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31 </action>
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32 <action type="set_environment">
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4
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33 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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34 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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9
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35 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
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11
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36 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable>
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37 <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
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38 <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
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5
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39 </action>
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0
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40 </actions>
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41 </install>
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42 <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
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43 </package>
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44 </tool_dependency>
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