Mercurial > repos > iuc > package_openbabel_2_3
comparison tool_dependencies.xml @ 0:99a10425de93 draft
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 15 Aug 2013 03:17:15 -0400 |
| parents | |
| children | e5ef70185d24 |
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| -1:000000000000 | 0:99a10425de93 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="eigen3" version="3.1.3"> | |
| 4 <repository changeset_revision="6a1c187f36aa" name="package_eigen_3_1" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="openbabel" version="2.3.2"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action> | |
| 10 | |
| 11 <!-- populate the environment variables from the dependend repos --> | |
| 12 <action type="set_environment_for_install"> | |
| 13 <repository changeset_revision="6a1c187f36aa" name="package_eigen_3_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
| 14 <package name="eigen3" version="3.1.3" /> | |
| 15 </repository> | |
| 16 </action> | |
| 17 | |
| 18 <!-- | |
| 19 Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version. | |
| 20 --> | |
| 21 <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import distutils.sysconfig; print "%s/libpython%s.so" % (distutils.sysconfig.get_config_var("LIBPL"), distutils.sysconfig.get_python_version())'`</action> | |
| 22 <action type="shell_command">make</action> | |
| 23 <action type="shell_command">make install</action> | |
| 24 <action type="set_environment"> | |
| 25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 26 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib</environment_variable> | |
| 27 <!-- internal variables for open babel --> | |
| 28 <environment_variable action="set_to" name="BABEL_DATADIR">$INSTALL_DIR/share/openbabel</environment_variable> | |
| 29 <environment_variable action="set_to" name="BABEL_LIBDIR">$INSTALL_DIR/lib/openbabel/2.3.2</environment_variable> | |
| 30 <!-- galaxy variables for other tool wrappers --> | |
| 31 <environment_variable action="set_to" name="OPENBABEL_LIB_DIR">$INSTALL_DIR/lib</environment_variable> | |
| 32 <environment_variable action="set_to" name="OPENBABEL_INCLUDE_DIR">$INSTALL_DIR/include</environment_variable> | |
| 33 </action> | |
| 34 </actions> | |
| 35 </install> | |
| 36 <readme>Compiling OpenBabel requires g++ and CMake 2.4+. Optional but required for a few features are the cairo development libraries. OPENBABEL_INCLUDE_DIR and OPENBABEL_LIB_DIR can be accessed from other tool wrappers.</readme> | |
| 37 </package> | |
| 38 </tool_dependency> |