Mercurial > repos > iuc > package_pear_0_9_6

comparison tool_dependencies.xml @ 0:833c4be8f4d4 draft default tip

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Imported from capsule None
author bgruening
date Wed, 20 May 2015 14:59:47 -0400
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-1:000000000000 0:833c4be8f4d4
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="pear" version="0.9.6">
4 <install version="1.0">
5 <actions_group>
6 <actions architecture="x86_64" os="linux">
7 <action type="download_by_url">http://sco.h-its.org/exelixis/web/software/pear/files/pear-0.9.6-bin-64.tar.gz</action>
8 <action type="move_file">
9 <source>pear-0.9.6-bin-64</source>
10 <destination>$INSTALL_DIR/bin/</destination>
11 </action>
12 <action type="shell_command">mv $INSTALL_DIR/bin/pear-0.9.6-bin-64 $INSTALL_DIR/bin/pear</action>
13 </actions>
14 <actions architecture="x86_64" os="darwin">
15 <action type="download_by_url">http://sco.h-its.org/exelixis/web/software/pear/files/pear-0.9.6-src.tar.gz</action>
16 <action type="autoconf" />
17 </actions>
18 <action type="set_environment">
19 <environment_variable action="set_to" name="PEAR_ROOT_DIR">$INSTALL_DIR</environment_variable>
20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
21 </action>
22 </actions_group>
23 </install>
24 <readme>PEAR - Paired-End reAd mergeR
25 PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger.
26 It is fully parallelized and can run with as low as just a few kilobytes of memory.
27
28 PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input.
29 In addition, it implements a statistical test for minimizing false-positive results.
30 Together with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on a standard desktop computer.
31 </readme>
32 </package>
33 </tool_dependency>