--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Dec 31 13:56:39 2015 -0500
@@ -0,0 +1,172 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bundle_jbrowse" version="1.12.0">
+        <install version="1.0">
+            <actions>
+                <action type="setup_perl_environment">
+                    <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                    <package sha256sum="4ddbb3cb985a79f69a34e7c26cde1c81120d03487e87366f9a119f90f7bdfe88">
+                        https://depot.galaxyproject.org/software/JSON/JSON_2.90_src_all.tar.gz
+                    </package>
+                    <package sha256sum="219b8a97164efc2b46985e9178234683d675c2eec2b90fa925844680144c12a1">
+                        https://depot.galaxyproject.org/software/Digest-Crc32/Digest-Crc32_0.01_src_all.tar.gz
+                    </package>
+
+                    <!-- Hash::Merge -->
+                    <package sha256sum="9fb0534bb7ef6ca1f6cc1dc3f29750d6d424394d14c40efdc77832fad3cebde8">
+                        https://depot.galaxyproject.org/software/Clone/Clone_0.38_src_all.tar.gz
+                    </package>
+                    <package sha256sum="47f9f03330b7595c94e73bdd17dc6682ba59d1cc89e63f4e319617f4bb122a64">
+                        https://depot.galaxyproject.org/software/Hash-Merge/Hash-Merge_0.200_src_all.tar.gz
+                    </package>
+
+                    <package sha256sum="d2e9351d58b8a93c86811e25a898ee651fc393a157413652bf42f9aada2eb284">
+                        https://depot.galaxyproject.org/software/PerlIO-gzip/PerlIO-gzip_0.19_src_all.tar.gz
+                    </package>
+
+                    <package sha256sum="96de61bad187919bf632cfa657f1b9957ad47defcc90dad8ee1f50c955eedb86">
+                        https://depot.galaxyproject.org/software/XSLoader/XSLoader_0.16_src_all.tar.gz
+                    </package>
+
+                    <!-- Heap::Simple -->
+                    <package sha256sum="ca3a089cb263ab6b9751df777cf6d3df3ba470d471d300a8076e4be6e288d057">
+                        https://depot.galaxyproject.org/software/Devel-Size/Devel-Size_0.80_src_all.tar.gz
+                    </package>
+                    <package sha256sum="a6a720764580081de6086e1bfab606accc1a388a88e47adaa38abe49787ca71b">
+                        https://depot.galaxyproject.org/software/Heap-Simple/Heap-Simple_0.13_src_all.tar.gz
+                    </package>
+                    <package sha256sum="ddd7f1f845db60855271bf8276a67b110d8960b16c4482c5c449b0a6b0636ac3">
+                        https://depot.galaxyproject.org/software/Heap-Simple-XS/Heap-Simple-XS_0.10_src_all.tar.gz
+                    </package>
+
+                    <!-- List::MoreUtils -->
+                    <package sha256sum="8f1622c5ebbfbcd519ead81df7917e48cb16cc527b1c46737b0459c3908a023f">
+                        https://depot.galaxyproject.org/software/Exporter-Tiny/Exporter-Tiny_0.042_src_all.tar.gz
+                    </package>
+                    <package sha256sum="66d31289647761e772fa26baa14e513e34c4186af7e5ee8a1bc13c79d1ee15b3">
+                        https://depot.galaxyproject.org/software/List-MoreUtils/List-MoreUtils_0.412_src_all.tar.gz
+                    </package>
+
+
+                    <!-- Exception:: Class -->
+                    <package sha256sum="9967feceea15227e442ec818723163eb6d73b8947e31f16ab806f6e2391af14a">
+                        https://depot.galaxyproject.org/software/Class-Data-Inheritable/Class-Data-Inheritable_0.08_src_all.tar.gz
+                    </package>
+                    <package sha256sum="1debe7273099a60e1386e0da5edbed7334db3cf3ed8e3b4106b087100b8ec5e4">
+                        https://depot.galaxyproject.org/software/Devel-StackTrace/Devel-StackTrace_2_src_all.tar.gz
+                    </package>
+                    <package sha256sum="819c756a69a6d1e31f396eca6a508b07b0a522a035b904cd1d432353cc362083">
+                        https://depot.galaxyproject.org/software/Exception-Class/Exception-Class_1.39_src_all.tar.gz
+                    </package>
+                    <!-- Test::Warn -->
+                    <package sha256sum="2dcca582a7ea5bada576eb27c4be1d1b064fb22175bdbd6d696c45d083560505">
+                        https://depot.galaxyproject.org/software/Sub-Uplevel/Sub-Uplevel_0.25_src_all.tar.gz
+                    </package>
+                    <package sha256sum="8197555b94189d919349a03f7058f83861f145af9bee59f505bfe47562144e41">
+                        https://depot.galaxyproject.org/software/Test-Warn/Test-Warn_0.30_src_all.tar.gz
+                    </package>
+                    <!-- File::Next -->
+                    <package>https://github.com/bgruening/download_store/raw/master/jbrowse/File-Next-1.12.tar.gz</package>
+                    <!-- Bio::Perl -->
+                    <package sha256sum="55a414ce89eb7a5e9e84186f286b002054f10ae8ef4f8f2d61bb710e7549f16b">
+                        https://depot.galaxyproject.org/software/Test-Simple/Test-Simple_1.001014_src_all.tar.gz
+                    </package>
+                    <package sha256sum="30e84ac4b31d40b66293f7b1221331c5a50561a39d580d85004d9c1fff991751">
+                        https://depot.galaxyproject.org/software/Algorithm-Diff/Algorithm-Diff_1.1903_src_all.tar.gz
+                    </package>
+                    <package sha256sum="638a57658cb119af1fe5b15e73d47c2544dcfef84af0c6b1b2e97f08202b686c">
+                        https://depot.galaxyproject.org/software/Test-NoWarnings/Test-NoWarnings_1.04_src_all.tar.gz
+                    </package>
+                    <package sha256sum="a3b4e55278757e77d50df0b1a79f42e6e8354b7d41db806da39bf161bee63aea">
+                        https://depot.galaxyproject.org/software/Capture-Tiny/Capture-Tiny_0.30_src_all.tar.gz
+                    </package>
+                    <package sha256sum="a67f50a48e313c1680cc662109ce5f913ea71454db355d0cf4db87ac89d2d2fa">
+                        https://depot.galaxyproject.org/software/Text-Diff/Text-Diff_1.41_src_all.tar.gz
+                    </package>
+                    <package sha256sum="2a3f4ad8442d9070780e58ef43722d19d1ee21a803bf7c8206877a10482de5a0">
+                        https://depot.galaxyproject.org/software/IO-String/IO-String_1.08_src_all.tar.gz
+                    </package>
+                    <package sha256sum="0f2f5d41e4c4454b01dedf3fa753cd51001b16e5336702e1b2c5b206a1bdc39c">
+                        https://depot.galaxyproject.org/software/Test-Deep/Test-Deep_0.115_src_all.tar.gz
+                    </package>
+                    <package sha256sum="7c657a178c32f48de3b469f6d4f67b75f018a3a19c1e6d0d8892188b0d261a66">
+                        https://depot.galaxyproject.org/software/Test-Differences/Test-Differences_0.63_src_all.tar.gz
+                    </package>
+                    <package sha256sum="7c6aa4c208c043c38631e2af8d28abf76d32a3dcd2ff4a94591f009a6ed3eab5">
+                        https://depot.galaxyproject.org/software/Test-Exception/Test-Exception_0.38_src_all.tar.gz
+                    </package>
+                    <package sha256sum="4ab122508d2fb86d171a15f4006e5cf896d5facfa65219c0b243a89906258e59">
+                        https://depot.galaxyproject.org/software/Data-Stag/Data-Stag_0.14_src_all.tar.gz
+                    </package>
+                    <package sha256sum="c2820c8de65f5fa59f218ac2be9be98b22cc1bb1a1f371e04375aa3b6054e244">
+                        https://depot.galaxyproject.org/software/Test-Most/Test-Most_0.34_src_all.tar.gz
+                    </package>
+                    <package sha256sum="7088d43d5f4902becfa5e0627751f5e6d0e0bdd1637b2d39e70ce807068a274e">
+                        https://depot.galaxyproject.org/software/URI/URI_1.67_src_all.tar.gz
+                    </package>
+                    <package sha256sum="616a7546bb3c58504de27304a0f6cb904e18b6bbcdb6a4ec8454f2bd37bb76d0">
+                        https://depot.galaxyproject.org/software/BioPerl/BioPerl_1.6.924_src_all.tar.gz
+                    </package>
+
+                    <!-- Other? Bio::GFF3::LowLevel -->
+                    <package sha256sum="3507f72541f66a2dce850b9b56771e5fccda3d215c52f74946c6e370c0f4a4da">
+                        https://depot.galaxyproject.org/software/Scalar-List-Utils/Scalar-List-Utils_1.42_src_all.tar.gz
+                    </package>
+                    <package sha256sum="055c9ed6b6f85d3764834a90a933f13dc8cf417c349197da4eebc7bb824f821a">
+                        https://depot.galaxyproject.org/software/Test-Harness/Test-Harness_3.35_src_all.tar.gz
+                    </package>
+                    <package sha256sum="55a414ce89eb7a5e9e84186f286b002054f10ae8ef4f8f2d61bb710e7549f16b">
+                        https://depot.galaxyproject.org/software/Test-Simple/Test-Simple_1.001014_src_all.tar.gz
+                    </package>
+                    <package sha256sum="dbf7c827984951fb248907f940fd8f19f2696bc5545c0a15287e0fbe56a52308">
+                        https://depot.galaxyproject.org/software/Pod-Escapes/Pod-Escapes_1.07_src_all.tar.gz
+                    </package>
+                    <package sha256sum="f7701bd28e05e7f82fe9a181bbab38f53fa6aeae48d2a810da74d1b981d4f392">
+                        https://depot.galaxyproject.org/software/Test/Test_1.26_src_all.tar.gz
+                    </package>
+                    <package sha256sum="b9cb056fffb737b9c12862099b952bf4ab4b1f599fd34935356ae57dab6f655f">
+                        https://depot.galaxyproject.org/software/Text-Tabs+Wrap/Text-Tabs+Wrap_2013.0523_src_all.tar.gz
+                    </package>
+                    <package sha256sum="6b6c7b58bf5cdd8163ca6c9d161a7b986e14ddef973ba342b3e07ab11afea0fb">
+                        https://depot.galaxyproject.org/software/Encode/Encode_2.73_src_all.tar.gz
+                    </package>
+                    <package sha256sum="7091566d331adf7b4803e7dbb7b1a2d13b616339ac9caa525033344c881a47ee">
+                        https://depot.galaxyproject.org/software/Pod-Simple/Pod-Simple_3.3_src_all.tar.gz
+                    </package>
+                    <package sha256sum="836a2f397b59f7194f4787235aeb0c7ac0c232bd6fc39be45b77e65a1a19e122">
+                        https://depot.galaxyproject.org/software/Exporter/Exporter_5.7_src_all.tar.gz
+                    </package>
+                    <package sha256sum="1f8f5c928fd6699a25ead67c23e1159482e7088ce684fbc084b3bcef115e1fc3">
+                        https://depot.galaxyproject.org/software/parent/parent_0.232_src_all.tar.gz
+                    </package>
+                    <package sha256sum="d1e0b5b7f93cc4133e2fc206a34e00dd868886b7ed850d799ccee824d25a225e">
+                        https://depot.galaxyproject.org/software/File-Path/File-Path_2.09_src_all.tar.gz
+                    </package>
+                    <package sha256sum="dcc789935126461c80df0653f98c1d8d0b936dcc3d04174287cb02767eca123c">
+                        https://depot.galaxyproject.org/software/Carp/Carp_1.36_src_all.tar.gz
+                    </package>
+                    <package sha256sum="13415323e48f7c9f34efdedf3d35141a7c3435e2beb8c6b922229dc317d321ac">
+                        https://depot.galaxyproject.org/software/File-Temp/File-Temp_0.2304_src_all.tar.gz
+                    </package>
+                    <package sha256sum="c8be6d29b0dfe304c4ddfcc140f93d4c4de7a8362ea6e2651611c288b53cc68a">
+                        https://depot.galaxyproject.org/software/Pod-Usage/Pod-Usage_1.67_src_all.tar.gz
+                    </package>
+                    <package sha256sum="cbfef8376d3d9026483360150e3745a27dad78e995348d0c08ef5b2e4374170c">
+                        https://depot.galaxyproject.org/software/Bio-GFF3/Bio-GFF3_2_src_all.tar.gz
+                    </package>
+
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Bundle::JBrowse (not a real perl bundle) installs all of the
+            dependencies needed for JBrowse to run.
+        
+        </readme>
+    </package>
+</tool_dependency>