Mercurial > repos > iuc > package_progressivemauve_2_4_0
changeset 0:0aeb3a1b5106 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_progressivemauve_2_4_0 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
author | iuc |
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date | Fri, 17 Jul 2015 14:21:34 -0400 |
parents | |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 45 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Jul 17 14:21:34 2015 -0400 @@ -0,0 +1,45 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="progressivemauve" version="2.4.0"> + <install version="1.0"> + <actions_group> + <actions os="linux" architecture="x86_64"> + <action type="download_by_url">http://darlinglab.org/mauve/downloads/mauve_linux_2.4.0.tar.gz</action> + <action type="move_file"> + <source>linux-x64/progressiveMauve</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>linux-x64/mauveAligner</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + </actions> + + <actions os="darwin" architecture="x86_64"> + <action type="download_by_url">http://darlinglab.org/mauve/downloads/Mauve-2.4.0.dmg </action> + <action type="shell_command"> + hdiutil attach Mauve-2.4.0.dmg && + mkdir -p $INSTALL_DIR/bin && + cp /Volumes/Mauve-2.4.0/Mauve.app/Contents/MacOS/progressiveMauve $INSTALL_DIR/bin && + cp /Volumes/Mauve-2.4.0/Mauve.app/Contents/MacOS/mauveAligner $INSTALL_DIR/bin && + hdiutil detach /Volumes/Mauve-2.4.0 + </action> + </actions> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme><![CDATA[ +Mauve is free of charge, open-source software licensed under the GNU GPL. + +Mauve is a system for constructing multiple genome alignments in the presence +of large-scale evolutionary events such as rearrangement and inversion. +Multiple genome alignments provide a basis for research into comparative +genomics and the study of genome-wide evolutionary dynamics. + +http://darlinglab.org/mauve/ +]]> + </readme> + </package> +</tool_dependency>