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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit 30d4cb2e85b56355004ad2a0a068787d72796a8e
author iuc
date Mon, 22 Jun 2015 11:48:20 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="python" version="2.7">
4 <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="bcbiogff" version="0.6.2">
7 <install version="1.0">
8 <actions>
9 <action type="setup_python_environment">
10 <repository changeset_revision="44bb4258922f" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
11 <package name="python" version="2.7" />
12 </repository>
13 <package>https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz#md5=476881ef4012262dfc8adc645ee786c4</package>
14 <package>https://pypi.python.org/packages/source/b/bcbio-gff/bcbio-gff-0.6.2.tar.gz#md5=d5aae8b125cdad4291f15bec20cfb0ef</package>
15 </action>
16 <action type="set_environment">
17 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
19 </action>
20 </actions>
21 </install>
22 <readme>
23 bcbio-gff
24 ---------
25
26 A python library to read and write Generic Feature Format (`GFF`_).
27 See the `wiki documentation`_ for details on usage. The goal is to
28 integrate this code in `gffutils`_ and `Biopython`_.
29
30 Installation from `bcbio-gff in pypi`_::
31
32 pip install bcbio-gff
33
34 This code is freely available for use under the `Biopython license &lt;https://github.com/biopython/biopython/blob/master/LICENSE&gt;`_.
35
36 .. _GFF: http://www.sequenceontology.org/gff3.shtml
37 .. _wiki documentation: http://biopython.org/wiki/GFF_Parsing
38 .. _gffutils: https://github.com/daler/gffutils
39 .. _Biopython: http://biopython.org
40 .. _bcbio-gff in pypi: https://pypi.python.org/pypi/bcbio-gff
41
42
43 </readme>
44 </package>
45 </tool_dependency>