Mercurial > repos > iuc > package_python_2_7_bcbiogff_0_6_2

view tool_dependencies.xml @ 3:f0de4bc3fb42 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_bcbiogff_0_6_2 commit b506753c5a6c755d070d36eab553e79692b2f232
author iuc
date Mon, 19 Oct 2015 19:25:38 -0400
parents 26264af17cbc
children b584674413b1
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="2.7.10">
        <repository changeset_revision="73631e818d3d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="bcbiogff" version="0.6.2">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                    <repository changeset_revision="73631e818d3d" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="python" version="2.7.10" />
                    </repository>
                    <package>https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz#md5#476881ef4012262dfc8adc645ee786c4</package>
                    <package>https://pypi.python.org/packages/source/b/bcbio-gff/bcbio-gff-0.6.2.tar.gz#md5#d5aae8b125cdad4291f15bec20cfb0ef</package>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
bcbio-gff
---------

A python library to read and write Generic Feature Format (`GFF`_).
See the `wiki documentation`_ for details on usage. The goal is to
integrate this code in `gffutils`_ and `Biopython`_.

Installation from `bcbio-gff in pypi`_::

  pip install bcbio-gff

This code is freely available for use under the `Biopython license &lt;https://github.com/biopython/biopython/blob/master/LICENSE&gt;`_.

.. _GFF: http://www.sequenceontology.org/gff3.shtml
.. _wiki documentation: http://biopython.org/wiki/GFF_Parsing
.. _gffutils: https://github.com/daler/gffutils
.. _Biopython: http://biopython.org
.. _bcbio-gff in pypi: https://pypi.python.org/pypi/bcbio-gff


        </readme>
    </package>
</tool_dependency>