Mercurial > repos > iuc > package_python_2_7_deeptools_1_5_11

view tool_dependencies.xml @ 1:01eb49da8dcf draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_1_5_11 commit b506753c5a6c755d070d36eab553e79692b2f232
author iuc
date Mon, 19 Oct 2015 19:26:03 -0400
parents 315b83e21eea
children cad615e7e064
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="samtools" version="0.1.19">
        <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="numpy" version="1.9">
        <repository changeset_revision="9f9eface3306" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="matplotlib" version="1.4">
        <repository changeset_revision="89e6da883c60" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="scipy" version="0.14">
        <repository changeset_revision="92d190ed366e" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="pysam" version="0.8.3">
        <repository changeset_revision="7defbb2032a1" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="bx-python" version="0.7.2">
        <repository changeset_revision="9e4101fb24af" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="ucsc_tools" version="312">
        <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="python" version="2.7.10">
        <repository changeset_revision="73631e818d3d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="deepTools" version="1.5.11">
        <install version="1.0">
            <actions>
                <action type="setup_python_environment">
                    <repository changeset_revision="73631e818d3d" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="python" version="2.7.10" />
                    </repository>
                    <repository changeset_revision="7defbb2032a1" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="pysam" version="0.8.3" />
                    </repository>
                    <repository changeset_revision="9f9eface3306" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                    <repository changeset_revision="89e6da883c60" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="matplotlib" version="1.4" />
                    </repository>
                    <repository changeset_revision="92d190ed366e" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.14" />
                    </repository>
                    <repository changeset_revision="9e4101fb24af" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="bx-python" version="0.7.2" />
                    </repository>
                    <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="samtools" version="0.1.19" />
                    </repository>
                    <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="ucsc_tools" version="312" />
                    </repository>
                    <package>https://github.com/fidelram/deepTools/archive/1.5.11.tar.gz</package>
                </action>

                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
                    <!-- libpng lib path -->
                    <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
                    <!-- disable the config file of deepTools -->
                    <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
                </action>
             </actions>
         </install>
         <readme>
            Installation of deepTools from Fidel Ramirez.
            https://github.com/fidelram/deepTools
         </readme>
     </package>
</tool_dependency>