Mercurial > repos > iuc > package_python_2_7_deeptools_2_2_2
comparison tool_dependencies.xml @ 0:3349ce2ef9ce draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_2_2 commit 3a65613d150cc89933488cf6a6c10492e66ead39
author | iuc |
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date | Wed, 09 Mar 2016 16:48:55 -0500 |
parents | |
children | 0e67aa094608 |
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-1:000000000000 | 0:3349ce2ef9ce |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="numpy" version="1.9"> | |
4 <repository changeset_revision="794f5cf3bb5d" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="pybigwig" version="0.2.5"> | |
7 <repository changeset_revision="a530e15a2e10" name="package_python_2_7_10_pybigwig_0_2_5" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
8 </package> | |
9 <package name="matplotlib" version="1.4"> | |
10 <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
11 </package> | |
12 <package name="scipy" version="0.14"> | |
13 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
14 </package> | |
15 <package name="pysam" version="0.8.3"> | |
16 <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
17 </package> | |
18 <package name="bx-python" version="0.7.2"> | |
19 <repository changeset_revision="836bb9ad054a" name="package_python_2_7_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
20 </package> | |
21 <package name="python" version="2.7.10"> | |
22 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
23 </package> | |
24 <package name="deepTools" version="2.2.2"> | |
25 <install version="1.0"> | |
26 <actions> | |
27 <action type="setup_python_environment"> | |
28 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
29 <package name="python" version="2.7.10" /> | |
30 </repository> | |
31 <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
32 <package name="pysam" version="0.8.3" /> | |
33 </repository> | |
34 <repository changeset_revision="794f5cf3bb5d" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
35 <package name="numpy" version="1.9" /> | |
36 </repository> | |
37 <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
38 <package name="matplotlib" version="1.4" /> | |
39 </repository> | |
40 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
41 <package name="scipy" version="0.14" /> | |
42 </repository> | |
43 <repository changeset_revision="836bb9ad054a" name="package_python_2_7_bx_python_0_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
44 <package name="bx-python" version="0.7.2" /> | |
45 </repository> | |
46 <repository changeset_revision="a530e15a2e10" name="package_python_2_7_10_pybigwig_0_2_5" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
47 <package name="pybigwig" version="0.2.5" /> | |
48 </repository> | |
49 <package sha256sum="f3d7cdec273a118e199f00cbbbbca7952c7e4ce4d4492c9106c780c629a78759">https://depot.galaxyproject.org/software/deeptools/deeptools_2.2.2_src_all.tar.gz</package> | |
50 </action> | |
51 | |
52 <action type="set_environment"> | |
53 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
54 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> | |
55 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable> | |
56 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable> | |
57 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable> | |
58 <!-- libpng lib path --> | |
59 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> | |
60 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable> | |
61 <!-- disable the config file of deepTools --> | |
62 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable> | |
63 </action> | |
64 </actions> | |
65 </install> | |
66 <readme> | |
67 Installation of deepTools from Fidel Ramirez. | |
68 https://github.com/fidelram/deepTools | |
69 </readme> | |
70 </package> | |
71 </tool_dependency> |