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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_deeptools_2_3_5 commit ff6e30e67657bc40a4e5b590bd93bc23c39534ee
author iuc
date Mon, 19 Sep 2016 16:51:43 -0400
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-1:000000000000 0:c3e87c8140fe
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="numpy" version="1.9">
4 <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="pybigwig" version="0.2.8">
7 <repository changeset_revision="5ac62a3f093f" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="twobitreader" version="3.1.4">
10 <repository changeset_revision="ca96776cd2f2" name="package_python_2_7_10_twobitreader_3_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package>
12 <package name="matplotlib" version="1.4">
13 <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package>
15 <package name="scipy" version="0.14">
16 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package>
18 <package name="pysam" version="0.8.3">
19 <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
20 </package>
21 <package name="python" version="2.7.10">
22 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
23 </package>
24 <package name="deepTools" version="2.3.5">
25 <install version="1.0">
26 <actions>
27 <action type="setup_python_environment">
28 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
29 <package name="python" version="2.7.10" />
30 </repository>
31 <repository changeset_revision="08db58be052a" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
32 <package name="pysam" version="0.8.3" />
33 </repository>
34 <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
35 <package name="numpy" version="1.9" />
36 </repository>
37 <repository changeset_revision="f7424e1cf115" name="package_python_2_7_matplotlib_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
38 <package name="matplotlib" version="1.4" />
39 </repository>
40 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
41 <package name="scipy" version="0.14" />
42 </repository>
43 <repository changeset_revision="5ac62a3f093f" name="package_python_2_7_10_pybigwig_0_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
44 <package name="pybigwig" version="0.2.8" />
45 </repository>
46 <repository changeset_revision="ca96776cd2f2" name="package_python_2_7_10_twobitreader_3_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
47 <package name="twobitreader" version="3.1.4" />
48 </repository>
49 <package sha256sum="ecd01bc47292c1cdef241040165ab7714994c48f7a75d3f52e185dfa876774bb">https://pypi.python.org/packages/e8/12/9985140e3e06e4946ce05cdb67b722aad4ac0ebb38d31ff7a7c80b54cb1a/deepTools-2.3.5.tar.gz</package>
50 </action>
51
52 <action type="set_environment">
53 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
54 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
55 <environment_variable action="set_to" name="DEEPTOOLS_ROOT_PATH">$INSTALL_DIR</environment_variable>
56 <environment_variable action="set_to" name="DEEPTOOLS_PYTHONPATH">$INSTALL_DIR</environment_variable>
57 <environment_variable action="set_to" name="DEEPTOOLS_PATH">$INSTALL_DIR/bin</environment_variable>
58 <!-- libpng lib path -->
59 <environment_variable action="set_to" name="LIBPNG_LIB_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
60 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LIBPNG_LIB_PATH]</environment_variable>
61 <!-- disable the config file of deepTools -->
62 <environment_variable action="set_to" name="DEEP_TOOLS_NO_CONFIG">TRUE</environment_variable>
63 </action>
64 </actions>
65 </install>
66 <readme>
67 Installation of deepTools from Fidel Ramirez.
68 https://github.com/fidelram/deepTools
69 </readme>
70 </package>
71 </tool_dependency>