Mercurial > repos > iuc > package_python_2_7_numpy_1_9

changeset 0:b4b823ad5f0f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_numpy_1_9 commit 025696892784ba9fd07404ce4d21f3dca4ac1a1e-dirty
author iuc
date Fri, 17 Jul 2015 14:24:55 -0400
parents
children 9f9eface3306
files tool_dependencies.xml
diffstat 1 files changed, 35 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jul 17 14:24:55 2015 -0400
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="atlas" version="3.10.2">
+        <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="python" version="2.7">
+        <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+        <package name="numpy" version="1.9">
+            <install version="1.0">
+                <actions>
+                    <action type="setup_python_environment">
+                       <repository changeset_revision="997181c8671c" name="package_python_2_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                           <package name="python" version="2.7" />
+                       </repository>
+                        <repository changeset_revision="0538fd672119" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                            <package name="atlas" version="3.10.2" />
+                        </repository>
+                        <!-- allow downloading and installing an Python package from https://pypi.org/ -->
+                        <package>https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz</package>
+                    </action>
+                    <action type="set_environment">
+                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
+                        <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR</environment_variable>
+                        <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]/atlas</environment_variable>
+                        <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
+                    </action>
+                </actions>
+            </install>
+            <readme>Compiling numpy requires a C and Fortran compiler (typically gcc and gfortran). The PYTHONPATH for numpy can be accessed through PYTHONPATH_NUMPY and the binaries with PATH_NUMPY.</readme>
+        </package>
+</tool_dependency>