Mercurial > repos > iuc > package_r_3_0_1

comparison tool_dependencies.xml @ 5:59b82e6e0801 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_1 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:51:04 -0400
parents c5ff6dd33c79
children
comparison
equal deleted inserted replaced
4:c5ff6dd33c79 5:59b82e6e0801
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <!--<package name="readline" version="6.2"> 3 <package name="readline" version="6.2">
4 <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" /> 4 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>--> 5 </package>
6 <package name="ncurses" version="5.9">
7 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package>
6 <package name="R_3_0_1" version="3.0.1"> 9 <package name="R_3_0_1" version="3.0.1">
7 <install version="1.0"> 10 <install version="1.0">
8 <actions> 11 <actions>
9 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action> 12 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
10 <!--<action type="set_environment_for_install"> 13 <action type="set_environment_for_install">
11 <repository name="package_readline_6_2" owner="iuc"> 14 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="readline" version="6.2" /> 15 <package name="readline" version="6.2" />
13 </repository> 16 </repository>
14 </action>--> 17 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="ncurses" version="5.9" />
19 </repository>
20 </action>
15 21
16 <action type="shell_command"> 22 <action type="shell_command">
17 ./configure --with-readline=no --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/ 23 ./configure CPPFLAGS=-I$READLINE_INCLUDE_PATH LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -lreadline -lncurses" --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/
18 </action> 24 </action>
19 <action type="shell_command">make</action> 25 <action type="shell_command">make</action>
20 <action type="shell_command">make install</action> 26 <action type="shell_command">make install</action>
21 <action type="set_environment"> 27 <action type="set_environment">
22 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> 28 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable>
23 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> 29 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> 30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
25 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable> 31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>
26 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable> 32 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
27 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable> 33 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable>