Mercurial > repos > iuc > package_r_3_0_1

diff tool_dependencies.xml @ 5:59b82e6e0801 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_1 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:51:04 -0400
parents c5ff6dd33c79
children
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--- a/tool_dependencies.xml	Tue Oct 15 12:49:04 2013 -0400
+++ b/tool_dependencies.xml	Fri Jul 17 10:51:04 2015 -0400
@@ -1,25 +1,31 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <!--<package name="readline" version="6.2">
-        <repository name="package_readline_6_2" owner="iuc" prior_installation_required="True" />
-    </package>-->
+    <package name="readline" version="6.2">
+        <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ncurses" version="5.9">
+        <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
     <package name="R_3_0_1" version="3.0.1">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
-                <!--<action type="set_environment_for_install">
-                    <repository name="package_readline_6_2" owner="iuc">
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="readline" version="6.2" />
                     </repository>
-                </action>-->
+                    <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="ncurses" version="5.9" />
+                    </repository>
+                </action>
 
                 <action type="shell_command">
-                    ./configure --with-readline=no --enable-R-shlib  --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/
+                    ./configure CPPFLAGS=-I$READLINE_INCLUDE_PATH LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -lreadline -lncurses" --enable-R-shlib  --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR/bin/ --datarootdir=$INSTALL_DIR/share/
                 </action>
                 <action type="shell_command">make</action>
                 <action type="shell_command">make install</action>
                 <action type="set_environment">
-                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
+                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable>
                     <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
                     <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>