Mercurial > repos > iuc > package_r_3_0_2

annotate tool_dependencies.xml @ 1:858a2281c2c5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:51:40 -0400
parents 50f7e1e71271
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="readline" version="6.2">
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4 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="ncurses" version="5.9">
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7 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="libpng" version="1.6.7">
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10 <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="R_3_0_2" version="3.0.2">
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13 <install version="1.0">
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14 <actions>
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15 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.2.tar.gz</action>
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16 <action type="set_environment_for_install">
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17 <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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18 <package name="readline" version="6.2" />
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19 </repository>
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20 <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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21 <package name="ncurses" version="5.9" />
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22 </repository>
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23 <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu">
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24 <package name="libpng" version="1.6.7" />
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25 </repository>
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26 </action>
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27
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28 <action type="shell_command">
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29 ./configure CPPFLAGS="-I$READLINE_INCLUDE_PATH -I${LIBPNG_ROOT}/include" LDFLAGS="-L$READLINE_LIB_PATH -L$NCURSES_LIB_PATH -L${LIBPNG_ROOT}/lib -lreadline -lncurses" --with-libpng --enable-R-shlib --with-x=no --libdir=$INSTALL_DIR/lib/ --bindir=$INSTALL_DIR --datarootdir=$INSTALL_DIR/share/
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30 </action>
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31
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32 <action type="shell_command">make</action>
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33 <action type="shell_command">make install</action>
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34 <action type="set_environment">
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35 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable>
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36 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
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37 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
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38 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>
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39 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
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40 <environment_variable action="set_to" name="R_PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
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41 </action>
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42 </actions>
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43 </install>
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44 <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme>
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45 </package>
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46 </tool_dependency>