Mercurial > repos > iuc > package_r_3_0_2

diff tool_dependencies.xml @ 1:858a2281c2c5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_0_2 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 10:51:40 -0400
parents 50f7e1e71271
children
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--- a/tool_dependencies.xml	Thu Feb 20 06:52:30 2014 -0500
+++ b/tool_dependencies.xml	Fri Jul 17 10:51:40 2015 -0400
@@ -1,26 +1,26 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="readline" version="6.2">
-        <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="ncurses" version="5.9">
-        <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="libpng" version="1.6.7">
-        <repository changeset_revision="51f77dcf27bd" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="R_3_0_2" version="3.0.2">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.2.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="052e8df231ac" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="readline" version="6.2" />
                     </repository>
-                    <repository changeset_revision="9ed7af129bd3" name="package_ncurses_5_9" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="5e1760c773ba" name="package_ncurses_5_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="ncurses" version="5.9" />
                     </repository>
-                    <repository changeset_revision="51f77dcf27bd" name="package_libpng_1_6_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="f48b920cae1f" name="package_libpng_1_6_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="libpng" version="1.6.7" />
                     </repository>
                 </action>
@@ -32,7 +32,7 @@
                 <action type="shell_command">make</action>
                 <action type="shell_command">make install</action>
                 <action type="set_environment">
-                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
+                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR</environment_variable>
                     <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
                     <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>