Mercurial > repos > iuc > package_rdkit_2012_12

comparison tool_dependencies.xml @ 2:842dd2fa4ace draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rdkit_2012_12 commit 710c0d73202078bd43efd595c28526ba26c8fa50-dirty
author iuc
date Sun, 01 Nov 2015 11:33:32 -0500
parents 2ab9cdc5cd14
children
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1:2ab9cdc5cd14 2:842dd2fa4ace
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.7.1"> 3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="boost" version="1.53.0"> 6 <package name="boost" version="1.55.0">
7 <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="f0da948c5302" name="package_boost_1_55" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 9
10 <package name="rdkit" version="2012_12_1"> 10 <package name="rdkit" version="2012_12_1">
11 <install version="1.0"> 11 <install version="1.0">
12 <actions> 12 <actions>
13 <!-- first action is always downloading --> 13 <!-- first action is always downloading -->
14 <action type="download_by_url">http://downloads.sourceforge.net/project/rdkit/rdkit/Q4_2012/RDKit_2012_12_1.tgz</action> 14 <action type="download_by_url">http://downloads.sourceforge.net/project/rdkit/rdkit/Q4_2012/RDKit_2012_12_1.tgz</action>
15 15
16 <!-- populate the environment variables from the dependend repos --> 16 <!-- populate the environment variables from the dependend repos -->
17 <action type="set_environment_for_install"> 17 <action type="set_environment_for_install">
18 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 18 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
19 <package name="numpy" version="1.7.1" /> 19 <package name="numpy" version="1.7.1" />
20 </repository> 20 </repository>
21 <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 21 <repository changeset_revision="f0da948c5302" name="package_boost_1_55" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
22 <package name="boost" version="1.53.0" /> 22 <package name="boost" version="1.55.0" />
23 </repository> 23 </repository>
24 </action> 24 </action>
25 25
26 <!-- PYTHONPATH_NUMPY is set in the numpy package --> 26 <!-- PYTHONPATH_NUMPY is set in the numpy package -->
27 <action type="shell_command">export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:`pwd`/lib/ &amp;&amp; 27 <action type="shell_command">export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:`pwd`/lib/ &amp;&amp;