Mercurial > repos > iuc > package_rdkit_2013_03

comparison tool_dependencies.xml @ 1:e949a14df33a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rdkit_2013_03 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 11:05:58 -0400
parents 98b2f159a259
children
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0:98b2f159a259 1:e949a14df33a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.7.1"> 3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="boost" version="1.53.0"> 6 <package name="boost" version="1.53.0">
7 <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 9
10 <package name="rdkit" version="2013_03_2"> 10 <package name="rdkit" version="2013_03_2">
11 <install version="1.0"> 11 <install version="1.0">
12 <actions> 12 <actions>
13 <!-- first action is always downloading --> 13 <!-- first action is always downloading -->
14 <action type="download_by_url">http://rdkit.googlecode.com/files/RDKit_2013_03_2.tgz</action> 14 <action type="download_by_url">http://rdkit.googlecode.com/files/RDKit_2013_03_2.tgz</action>
15 15
16 <!-- populate the environment variables from the dependend repos --> 16 <!-- populate the environment variables from the dependend repos -->
17 <action type="set_environment_for_install"> 17 <action type="set_environment_for_install">
18 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 18 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
19 <package name="numpy" version="1.7.1" /> 19 <package name="numpy" version="1.7.1" />
20 </repository> 20 </repository>
21 <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 21 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
22 <package name="boost" version="1.53.0" /> 22 <package name="boost" version="1.53.0" />
23 </repository> 23 </repository>
24 </action> 24 </action>
25 25
26 <!-- PYTHONPATH_NUMPY is set in the numpy package --> 26 <!-- PYTHONPATH_NUMPY is set in the numpy package -->
34 34
35 <action type="set_environment"> 35 <action type="set_environment">
36 <environment_variable action="set_to" name="RDBASE">$INSTALL_DIR/rdkit</environment_variable> 36 <environment_variable action="set_to" name="RDBASE">$INSTALL_DIR/rdkit</environment_variable>
37 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/rdkit/lib/</environment_variable> 37 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/rdkit/lib/</environment_variable>
38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/rdkit/bin</environment_variable> 38 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/rdkit/bin</environment_variable>
39 <!-- on fedora everything is installed under lib64 -->
39 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/rdkit/lib/python2.7/site-packages/</environment_variable> 40 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/rdkit/lib/python2.7/site-packages/</environment_variable>
41 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/rdkit/lib64/python2.7/site-packages/</environment_variable>
40 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> 42 <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
41 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable> 43 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable>
42 </action> 44 </action>
43 </actions> 45 </actions>
44 </install> 46 </install>