Mercurial > repos > iuc > package_rnastar_2_40d

comparison tool_dependencies.xml @ 0:984875409942 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rnastar_2_40d commit ca3eadb47393f6094332757e420426de6061f449
author iuc
date Mon, 18 May 2015 12:44:41 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="rnastar" version="2.4.0d">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz</action>
7 <action type="shell_command">make</action>
8 <action type="make_directory">$INSTALL_DIR</action>
9 <action type="make_directory">$INSTALL_DIR/bin</action>
10 <action type="move_file">
11 <source>STAR</source>
12 <destination>$INSTALL_DIR/bin</destination>
13 </action>
14
15 <action type="set_environment">
16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
17 </action>
18 <action type="set_environment">
19 <environment_variable action="set_to" name="RNA_STAR_PATH">$INSTALL_DIR/bin/STAR</environment_variable>
20 </action>
21 </actions>
22 </install>
23 <readme>
24 Installs the STAR binary for rnastar - see https://github.com/alexdobin/STAR/archive/STAR_2.4.0d.tar.gz
25 was https://code.google.com/p/rna-star/
26 </readme>
27 </package>
28 </tool_dependency>
29