Mercurial > repos > iuc > package_rpy2_2_3_6

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rpy2_2_3_6 commit dfaab7cbfdee82c9fe4ff34ce02b42fc456b9db9
author iuc
date Sun, 13 Dec 2015 15:16:07 -0500
parents 218c5b67206d
children 5bd646006a15
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<?xml version="1.0"?>
<tool_dependency>
    <package name="R_3_0_1" version="3.0.1">
        <repository changeset_revision="59b82e6e0801" name="package_r_3_0_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="readline" version="6.2">
        <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="rpy2_2_3_6" version="2.3.6">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.3.6.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="readline" version="6.2" />
                    </repository>
                    <repository changeset_revision="59b82e6e0801" name="package_r_3_0_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="R_3_0_1" version="3.0.1" />
                    </repository>
                </action>

                <action type="shell_command">
                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
                    export LDFLAGS="-L$READLINE_LIB_PATH -lreadline" &amp;&amp;
                    export CPPFLAGS="-I$READLINE_INCLUDE_PATH" &amp;&amp;
                    python setup.py build --r-home $R_HOME --r-home-lib $R_HOME/lib install --install-lib $INSTALL_DIR/lib/python
                </action>
                <action type="set_environment">
                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                    <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[READLINE_LIB_PATH]</environment_variable>
                    <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[RHOME]/lib</environment_variable>
                </action>
            </actions>
        </install>
        <readme>rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.
        http://rpy.sourceforge.net/rpy2.html
        </readme>
    </package>
</tool_dependency>