Mercurial > repos > iuc > package_rsem_1_2_28

annotate tool_dependencies.xml @ 0:4567331d510a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
author iuc
date Mon, 25 Apr 2016 09:55:09 -0400
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0
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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diff changeset
1 <?xml version="1.0"?>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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2 <tool_dependency>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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3 <package name="ncurses" version="6.0">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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4 <repository changeset_revision="0efde9889efd" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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5 </package>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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6 <package name="zlib" version="1.2.8">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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7 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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8 </package>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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9 <package name="rsem" version="1.2.28">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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10 <install version="1.0">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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11 <actions>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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12 <action sha256sum="b54c3ac0ab44b470ab0c29852d30b5194674e36375c3b9067eb3150f569de53e" type="download_by_url">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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13 https://github.com/deweylab/RSEM/archive/v1.2.28.tar.gz
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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14 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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15 <action type="set_environment_for_install">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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16 <repository changeset_revision="0efde9889efd" name="package_ncurses_6_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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17 <package name="ncurses" version="6.0" />
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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18 </repository>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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19 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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20 <package name="zlib" version="1.2.8" />
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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21 </repository>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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22 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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23 <action type="shell_command">sed -i.bak -e 's/-lcurses/-lncurses/' samtools*/Makefile samtools*/config.mk</action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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24 <action type="shell_command">sed -i.bak -e "s|-lz|-lz -L${ZLIB_ROOT_PATH}/lib|" Makefile samtools*/Makefile</action> <!-- In case you have an obsolete zlib in /usr/lib -->
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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25 <action type="shell_command">make</action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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26
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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27 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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28 <source>rsem-bam2readdepth</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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29 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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30 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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31 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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32 <source>rsem-bam2wig</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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33 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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34 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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35 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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36 <source>rsem-build-read-index</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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37 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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38 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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39 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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40 <source>rsem-calculate-credibility-intervals</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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41 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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42 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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43 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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44 <source>rsem-calculate-expression</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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45 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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46 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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47 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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48 <source>rsem-control-fdr</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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49 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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50 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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51 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
parents:
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52 <source>rsem-extract-reference-transcripts</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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53 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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54 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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55 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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56 <source>rsem-gen-transcript-plots</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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57 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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58 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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59 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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60 <source>rsem-generate-data-matrix</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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61 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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62 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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63 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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64 <source>rsem-generate-ngvector</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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65 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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66 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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67 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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68 <source>rsem-get-unique</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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69 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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70 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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71 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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72 <source>rsem-gff3-to-gtf</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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73 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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74 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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75 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
parents:
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76 <source>rsem-parse-alignments</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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77 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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78 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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79 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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80 <source>rsem-plot-model</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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81 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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82 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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83 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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84 <source>rsem-plot-transcript-wiggles</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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85 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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86 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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87 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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88 <source>rsem-prepare-reference</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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89 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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90 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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91 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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92 <source>rsem-preref</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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93 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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94 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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95 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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96 <source>rsem-refseq-extract-primary-assembly</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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97 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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98 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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99 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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100 <source>rsem-run-ebseq</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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101 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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102 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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103 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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104 <source>rsem-run-em</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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105 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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106 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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107 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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108 <source>rsem-run-gibbs</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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109 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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110 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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111 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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112 <source>rsem-sam-validator</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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113 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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114 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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115 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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116 <source>rsem-scan-for-paired-end-reads</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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117 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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118 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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119 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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120 <source>rsem-simulate-reads</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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121 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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122 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
iuc
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123 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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124 <source>rsem-synthesis-reference-transcripts</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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125 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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126 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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127 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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128 <source>rsem-tbam2gbam</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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129 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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130 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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131 <action type="move_file">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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132 <source>rsem_perl_utils.pm</source>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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133 <destination>$INSTALL_DIR</destination>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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134 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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135
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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136 <action type="set_environment">
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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137 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/</environment_variable>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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138 </action>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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139 </actions>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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140 </install>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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141 </package>
4567331d510a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_rsem_1_2_28 commit 77385ec02b79f527348aff01bd83a019e30f5f45
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142 </tool_dependency>