Mercurial > repos > iuc > package_sailfish_0_6

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_6 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 15:01:38 -0400
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="boost" version="1.53.0">
4 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="sailfish" version="0.6.3">
8 <install version="1.0">
9 <actions>
10 <!-- first action is always downloading -->
11 <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/archive/v0.6.3.tar.gz</action>
12
13 <!-- populate the environment variables from the dependend repos -->
14 <action type="set_environment_for_install">
15 <repository changeset_revision="cee17eb9de41" name="package_boost_1_53" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
16 <package name="boost" version="1.53.0" />
17 </repository>
18 </action>
19
20 <!-- PYTHONPATH_NUMPY is set in the numpy package -->
21 <action type="shell_command">
22 mkdir build &amp;&amp;
23 cd build &amp;&amp;
24 cmake .. -DBOOST_ROOT=$BOOST_ROOT_DIR -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR</action>
25 <action type="shell_command">cd ./build &amp;&amp; make </action>
26 <action type="shell_command">cd ./build &amp;&amp; make install</action>
27
28 <action type="set_environment">
29 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable>
30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable>
32 </action>
33 </actions>
34 </install>
35 <readme>Compiling sailfish requires cmake and C++11 compiler (usually gcc).</readme>
36 </package>
37 </tool_dependency>