Mercurial > repos > iuc > package_sailfish_0_7_6
diff tool_dependencies.xml @ 0:04996d8b8587 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_sailfish_0_7_6 commit da2c0649c11ed0d54c1de8d345be95882717bd1a-dirty
| author | iuc |
|---|---|
| date | Fri, 16 Oct 2015 15:07:45 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Oct 16 15:07:45 2015 -0400 @@ -0,0 +1,58 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="sailfish" version="0.7.6"> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/releases/download/v0.7.6/SailfishBeta-0.7.6_Linux-x86-64.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions architecture="x86_64" os="darwin"> + <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/releases/download/v0.7.6/SailfishBeta-0.7.6_OSX_10.10.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions> + <!-- first action is always downloading --> + <action type="download_by_url">https://github.com/kingsfordgroup/sailfish/archive/v0.7.6.tar.gz</action> + <package name="boost" version="1.57"> + <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="cmake" version="3.2.3"> + <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <!-- populate the environment variables from the dependend repos --> + <action type="set_environment_for_install"> + <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="boost" version="1.57" /> + </repository> + <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="cmake" version="3.2.3" /> + </repository> + </action> + + <!-- PYTHONPATH_NUMPY is set in the numpy package --> + <action type="shell_command"> + mkdir build && + cd build && + cmake .. -DBOOST_ROOT=$BOOST_ROOT_DIR -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR</action> + <action type="shell_command">cd ./build && make </action> + <action type="shell_command">cd ./build && make install</action> + <action type="set_environment"> + <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[BOOST_ROOT_DIR]/lib/</environment_variable> + </action> + </actions> + <action type="set_environment"> + <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme>Compiling sailfish requires a C++11 compiler (usually gcc).</readme> + </package> +</tool_dependency>