Mercurial > repos > iuc > package_scikit_learn_0_13

comparison tool_dependencies.xml @ 6:4229f8f239b3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_scikit_learn_0_13 commit e10d6e2c4435771dc6f44d940359c1a31c0d6742-dirty
author iuc
date Fri, 17 Jul 2015 11:12:23 -0400
parents 2404fd8dc141
children
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5:2404fd8dc141 6:4229f8f239b3
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.7.1"> 3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="scipy" version="0.12.0"> 6 <package name="scipy" version="0.12.0">
7 <repository changeset_revision="984d208b0808" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="matplotlib" version="1.2.1"> 9 <package name="matplotlib" version="1.2.1">
10 <repository changeset_revision="dceff6072512" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="f4e53dfdd044" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="scikit_learn" version="0.13.1"> 12 <package name="scikit_learn" version="0.13.1">
13 <install version="1.0"> 13 <install version="1.0">
14 <actions> 14 <actions>
15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> 15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action>
16 <action type="set_environment_for_install"> 16 <action type="set_environment_for_install">
17 <repository changeset_revision="98a7d116c15f" name="package_lapack_3_4" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="5686c79a72d5" name="package_lapack_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
18 <package name="lapack" version="3.4.2" /> 18 <package name="lapack" version="3.4.2" />
19 </repository> 19 </repository>
20 <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 20 <repository changeset_revision="300877695495" name="package_numpy_1_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
21 <package name="numpy" version="1.7.1" /> 21 <package name="numpy" version="1.7.1" />
22 </repository> 22 </repository>
23 <repository changeset_revision="984d208b0808" name="package_scipy_0_12" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 23 <repository changeset_revision="cfbbe183f8a7" name="package_scipy_0_12" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
24 <package name="scipy" version="0.12.0" /> 24 <package name="scipy" version="0.12.0" />
25 </repository> 25 </repository>
26 <repository changeset_revision="dceff6072512" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> 26 <repository changeset_revision="f4e53dfdd044" name="package_matplotlib_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
27 <package name="matplotlib" version="1.2.1" /> 27 <package name="matplotlib" version="1.2.1" />
28 </repository> 28 </repository>
29 </action> 29 </action>
30 30
31 <action type="make_directory">$INSTALL_DIR/lib/python</action> 31 <action type="make_directory">$INSTALL_DIR/lib/python</action>
32 <action language="cheetah" type="template_command"> 32 <action language="cheetah" type="template_command">
33 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp; 33 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp;
34 34
35 export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp; 35 export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp;
36 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB &amp;&amp; 36 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB &amp;&amp;
37 37
38 python setup.py install --install-lib $env.INSTALL_DIR/lib/python 38 python setup.py install --install-lib $env.INSTALL_DIR/lib/python
39 </action> 39 </action>
40 <action type="set_environment"> 40 <action type="set_environment">
49 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> 49 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable>
50 </action> 50 </action>
51 </actions> 51 </actions>
52 </install> 52 </install>
53 <readme> 53 <readme>
54 Compiling scikit-learn requires a C compiler (typically gcc). 54 Compiling scikit-learn requires a C compiler (typically gcc).
55 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. 55 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.
56 56
57 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies 57 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies
58 </readme> 58 </readme>
59 </package> 59 </package>
60 </tool_dependency> 60 </tool_dependency>