# HG changeset patch # User iuc # Date 1412848521 14400 # Node ID 8e53bbb045165cfcfef30206e0da9aa6b2ab308f # Parent 25b635f2eaa5aa0cc3069457bd1a26f304588631 Uploaded diff -r 25b635f2eaa5 -r 8e53bbb04516 tool_dependencies.xml --- a/tool_dependencies.xml Thu Oct 09 05:20:55 2014 -0400 +++ b/tool_dependencies.xml Thu Oct 09 05:55:21 2014 -0400 @@ -1,31 +1,32 @@ - - - - - - - - - - - - - https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5=d9822ad0238e17b382a3c756ea94fe0d - - - - - - - - - - - - $INSTALL_DIR/lib/python - + + + + + + + + + + + + + https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5=d9822ad0238e17b382a3c756ea94fe0d + + + + + + + + + + + + + $INSTALL_DIR/lib/python + export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && export PATH=\$PATH:$env.PATH_NUMPY && @@ -33,23 +34,24 @@ python setup.py install --install-lib $env.INSTALL_DIR/lib/python - - $INSTALL_DIR/lib/python - $INSTALL_DIR/bin - $ENV[PYTHONPATH_NUMPY] - $ENV[PATH_NUMPY] - $ENV[PYTHONPATH_SCIPY] - $ENV[PATH_SCIPY] - $ENV[PYTHONPATH_MATPLOTLIB] - $INSTALL_DIR/lib/python - - - - + + $INSTALL_DIR/lib/python + $INSTALL_DIR/bin + $ENV[PYTHONPATH_NUMPY] + $ENV[PATH_NUMPY] + $ENV[PYTHONPATH_SCIPY] + $ENV[PATH_SCIPY] + $ENV[PYTHONPATH_MATPLOTLIB] + + $INSTALL_DIR/lib/python + + + + Compiling scikit-learn requires a C compiler (typically gcc). The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies - +