Mercurial > repos > iuc > package_seqtk_1_0_r75

changeset 0:8b7d6f6cb89b draft default tip

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author iuc
date Thu, 05 Feb 2015 11:52:29 -0500
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files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Feb 05 11:52:29 2015 -0500
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="seqtk" version="1.0-r75-dirty">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone https://github.com/lh3/seqtk/ seqtk</action>
+                <action type="shell_command">git reset --hard 08b3625c2a7aae3eca9ab056e1adea52ec22cbef</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>seqtk</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                  <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Seqtk is a fast and lightweight tool for processing sequences in the FASTA or
+FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be
+optionally compressed by gzip.
+        </readme>
+    </package>
+</tool_dependency>