Mercurial > repos > iuc > package_stacks_1_40
comparison tool_dependencies.xml @ 1:0beed64123fb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_stacks_1_40 commit 64069b03d33644632275cb79a017f5425323c75e
| author | iuc |
|---|---|
| date | Wed, 15 Jun 2016 05:37:51 -0400 |
| parents | 5eac5e2d91e2 |
| children | 95cffefc0dfe |
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| 0:5eac5e2d91e2 | 1:0beed64123fb |
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| 4 <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="stacks" version="1.40"> | 6 <package name="stacks" version="1.40"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action sha256sum="bf2304ba4ec44991db327ea77eb0f8c58de6d665162abf72470f5cd9dfb71493" type="download_by_url">https://depot.galaxyproject.org/software/stacks/stacks-1.40_src_all.tar.gz</action> | 9 <action sha256sum="bf2304ba4ec44991db327ea77eb0f8c58de6d665162abf72470f5cd9dfb71493" type="download_by_url">https://depot.galaxyproject.org/software/stacks/stacks_1.40_src_all.tar.gz</action> |
| 10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-bam --with-bam-include-path=${BAM_ROOT}/include/bam --with-bam-lib-path=${BAM_LIB_PATH}</action> | 10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-bam --with-bam-include-path=${BAM_ROOT}/include/bam --with-bam-lib-path=${BAM_LIB_PATH}</action> |
| 11 <action type="shell_command">make</action> | 11 <action type="shell_command">make</action> |
| 12 <action type="shell_command">make install</action> | 12 <action type="shell_command">make install</action> |
| 13 <!-- create env.sh --> | 13 <!-- create env.sh --> |
| 14 <action type="set_environment"> | 14 <action type="set_environment"> |