Mercurial > repos > iuc > package_stacks_1_40
comparison tool_dependencies.xml @ 0:5eac5e2d91e2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_stacks_1_40 commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
| author | iuc |
|---|---|
| date | Tue, 14 Jun 2016 14:01:20 -0400 |
| parents | |
| children | 0beed64123fb |
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| -1:000000000000 | 0:5eac5e2d91e2 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="samtools" version="0.1.19"> | |
| 4 <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="stacks" version="1.40"> | |
| 7 <install version="1.0"> | |
| 8 <actions> | |
| 9 <action sha256sum="bf2304ba4ec44991db327ea77eb0f8c58de6d665162abf72470f5cd9dfb71493" type="download_by_url">https://depot.galaxyproject.org/software/stacks/stacks-1.40_src_all.tar.gz</action> | |
| 10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-bam --with-bam-include-path=${BAM_ROOT}/include/bam --with-bam-lib-path=${BAM_LIB_PATH}</action> | |
| 11 <action type="shell_command">make</action> | |
| 12 <action type="shell_command">make install</action> | |
| 13 <!-- create env.sh --> | |
| 14 <action type="set_environment"> | |
| 15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable> | |
| 16 <environment_variable action="set_to" name="STACKS_ROOT_DIR">$INSTALL_DIR/</environment_variable> | |
| 17 </action> | |
| 18 </actions> | |
| 19 </install> | |
| 20 <readme> | |
| 21 This package installs STACKS from the sources available. Based on Cyril Monjeuad version | |
| 22 </readme> | |
| 23 </package> | |
| 24 </tool_dependency> |