Mercurial > repos > iuc > package_stacks_1_40
comparison tool_dependencies.xml @ 2:95cffefc0dfe draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_stacks_1_40 commit 6b38bb0f0d7e65b01680a4b56bf8a996c445e58f
author | iuc |
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date | Wed, 15 Jun 2016 06:22:39 -0400 |
parents | 0beed64123fb |
children | 51d4ab2c4dcf |
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1:0beed64123fb | 2:95cffefc0dfe |
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5 </package> | 5 </package> |
6 <package name="stacks" version="1.40"> | 6 <package name="stacks" version="1.40"> |
7 <install version="1.0"> | 7 <install version="1.0"> |
8 <actions> | 8 <actions> |
9 <action sha256sum="bf2304ba4ec44991db327ea77eb0f8c58de6d665162abf72470f5cd9dfb71493" type="download_by_url">https://depot.galaxyproject.org/software/stacks/stacks_1.40_src_all.tar.gz</action> | 9 <action sha256sum="bf2304ba4ec44991db327ea77eb0f8c58de6d665162abf72470f5cd9dfb71493" type="download_by_url">https://depot.galaxyproject.org/software/stacks/stacks_1.40_src_all.tar.gz</action> |
10 | |
11 <action type="set_environment_for_install"> | |
12 <repository changeset_revision="96aab723499f" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | |
13 <package name="samtools" version="0.1.19" /> | |
14 </repository> | |
15 </action> | |
16 | |
10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-bam --with-bam-include-path=${BAM_ROOT}/include/bam --with-bam-lib-path=${BAM_LIB_PATH}</action> | 17 <action type="shell_command">./configure --prefix=$INSTALL_DIR --enable-bam --with-bam-include-path=${BAM_ROOT}/include/bam --with-bam-lib-path=${BAM_LIB_PATH}</action> |
11 <action type="shell_command">make</action> | 18 <action type="shell_command">make</action> |
12 <action type="shell_command">make install</action> | 19 <action type="shell_command">make install</action> |
13 <!-- create env.sh --> | 20 <!-- create env.sh --> |
14 <action type="set_environment"> | 21 <action type="set_environment"> |