comparison tool_dependencies.xml @ 0:cd94bd10219b draft default tip

Uploaded tool dependency definition.
author iuc
date Thu, 05 Mar 2015 10:52:50 -0500
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1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="stringtie" version="1.0.1">
4 <install version="1.0">
5 <actions_group>
6 <actions architecture="x86_64" os="linux">
7 <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.Linux_x86_64.tar.gz</action>
8 <action type="move_file">
9 <source>stringtie</source>
10 <destination>$INSTALL_DIR/bin</destination>
11 </action>
12 </actions>
13 <actions architecture="x86_64" os="darwin">
14 <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.OSX_x86_64.tar.gz</action>
15 <action type="move_file">
16 <source>stringtie</source>
17 <destination>$INSTALL_DIR/bin</destination>
18 </action>
19 </actions>
20 <actions>
21 <action type="download_by_url">http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.0.1.tar.gz</action>
22 <action type="shell_command">make release</action>
23 <action type="move_file">
24 <source>stringtie</source>
25 <destination>$INSTALL_DIR/bin</destination>
26 </action>
27 </actions>
28 <action type="set_environment">
29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
30 </action>
31 </actions_group>
32 </install>
33 <readme>StringTie is a fast and highly efficient assembler of RNA-Seq
34 alignments into potential transcripts. It is primarily a genome-guided
35 transcriptome assembler, although it can borrow algorithmic techniques
36 from de novo genome assembly to help with transcript assembly. Its input
37 can include not only the spliced read alignments used by reference-based
38 assemblers, but also longer contigs that were assembled de novo from
39 unambiguous, non-branching parts of a transcript.</readme>
40 </package>
41 </tool_dependency>