Mercurial > repos > iuc > package_subread_1_4_6_p5

changeset 0:3645871df985 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_subread_1_4_6_p5 commit 4f89482db4edf80fb5cd8dfa0e661761b032817c
author iuc
date Fri, 01 Jul 2016 03:15:22 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 42 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jul 01 03:15:22 2016 -0400
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="subread" version="1.4.6p5">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url"
+                    sha256sum="8292ff6420356a5560c4a07f876f785622abbcae9fa54ef6750d102f40f78315">http://downloads.sourceforge.net/project/subread/subread-1.4.6-p5/subread-1.4.6-p5-source.tar.gz</action>
+                <action type="shell_command"><![CDATA[
+                    cd src/ && make -f Makefile.Linux
+                ]]></action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/utilities</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Downloads and installs the Subread package containing:
+             - exactSNP
+             - featureCounts
+             - subindel
+             - subjunc
+             - subread-align
+             - subread-buildindex
+
+            with the corresponding utilities:
+              * coverageCount
+              * globalReassembly
+              * propmapped
+              * qualityScores
+              * removeDup
+              * subread-fullscan
+              * subtools
+
+            http://subread.sourceforge.net/
+        </readme>
+    </package>
+</tool_dependency>